C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000460608 CTD-2301A4.3-001 ENSG00000240729 9606 + 5:177264766-177265241 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000460608
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000460608 0.103±0.00 0.643±0.00 0.515±0.00 0.155±0.10 0.714±0.66 0.024±0.00 0.137±0.04 0.642±0.62 0.433±0.36 0.199±0.10 0.096±0.00 0.159±0.03 0.201±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000OQ CIL_0000OQ_0002 CGP 5:177086886-177300215
CIL_0008A2 CIL_0008A2_0001 VISTA 5:177089375-177692188
CIL_0002YK CIL_0002YK_0001 CGP 5:177133025-177303744

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 462
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 462
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 462
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 457
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 435
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 435
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 435
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 424
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 424
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 401
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 374
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 300
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 230
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 3e-30 135
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-21 104

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