C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486753 RP11-48B14.1-001 ENSG00000240898 9606 + 17:3665220-3665702 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000486753
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000486753 0.342±0.00 1.847±0.00 0.425±0.00 0.444±0.35 0.746±0.00 0.143±0.00 1.320±0.00 1.198±1.12 0.401±0.00 0.300±0.00 0.482±0.27 0.292±0.16 0.317±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060X CIL_00060X_0002 CGP 17:3663063-3696194

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 549
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 549
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 549
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 536
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 516
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 514
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 505
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 499
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 494
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 364
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 302
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 254
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 250
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 2.8026e-45 185
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-21 104

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