C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401418 RPL21P28-001 ENSG00000220749 9606 - 1:212051524-212052006 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryTestisENST00000401418
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Testis
ENST00000401418 0.190±0.00 0.281±0.00 0.057±0.00 0.027±0.00 0.104±0.00 0.025±0.00 0.026±0.00 0.026±0.00 0.073±0.03 0.075±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000128 CIL_000128_0002 CGP 1:211940399-212107400
CIL_000129 CIL_000129_0002 CGP 1:212035553-212361863

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 588
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 588
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 588
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 560
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 560
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 544
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 542
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 527
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 514
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 508
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 460
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 448
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 438
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 381
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 329
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 285
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 272
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000119382 Gm14106-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 0 196
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1.99993e-41 172
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 8e-21 104

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