C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397467 RPL21P17-001 ENSG00000214073 9606 + 3:1905651-1906125 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000397467
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000397467 0.202±0.00 0.211±0.00 0.092±0.00 0.119±0.00 0.334±0.00 0.144±0.00 0.242±0.00 0.522±0.03 0.138±0.00 0.082±0.01 0.041±0.00 0.263±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00050H CIL_00050H_0001 CGP 3:1092576-3057956

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 508
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 508
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 508
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 497
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 492
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 481
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 481
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 475
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 470
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 459
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 453
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 453
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 451
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 448
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 442
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 436
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 414
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 407
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 370
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 331
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000034094 Gins3-201 protein_coding Mus_musculus 0 255
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 231
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 217
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 1.4013e-45 187
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 8e-31 137
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 1e-29 134

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