C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5069
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050581 Gm5069-002 ENSMUSG00000055676 10090 - 1:180326970-180330550 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000050581
Transcript ID Brain
ENSMUST00000050581 40.180±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000985 CIL_000985_0002 VISTA 1:179908053-180512549
CIL_0008CY CIL_0008CY_0002 VISTA 1:179968494-180569356

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 418
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1192
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 1112
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1171
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1192
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1192
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 510
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 907
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 837
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 963
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 828
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 580
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 832
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 776
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1027
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 900
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 689
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 821
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 562
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 712
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 793
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 645
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 645
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 601
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 2e-35 150
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 540
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 780
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 0 431
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1085
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 795
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 660
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 965
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 965
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 597
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 784
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 865
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 854
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 935
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 671
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 294
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 863
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 885
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 924
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 597
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 542
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1079

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