C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 3222
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071282 Gm3222-201 ENSMUSG00000079311 10090 + 17:14709066-14710055 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000071282
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000071282 0.257±0.20 0.163±0.09 2.522±1.60 0.857±1.05 0.273±0.20 0.214±0.12 0.499±0.38 0.314±0.12 1.275±2.36 0.092±0.01 0.853±0.21 0.230±0.08 0.236±0.13 0.042±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004W1 CIL_0004W1_0002 CGP 17:14665500-14934653

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 460
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1197
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 950
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1195
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1197
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1197
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 558
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 977
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 911
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 1013
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 904
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 322
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 665
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 887
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 848
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1092
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 924
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 747
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 907
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 627
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 745
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 863
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 675
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 682
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 673
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 9e-34 145
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 588
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 830
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1142
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 861
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 612
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 950
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 950
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 634
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 850
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 904
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 913
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 981
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 695
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 305
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 300
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 917
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 950
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 966
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 619
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 900
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 797
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 797
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 603
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1075

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