C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12447
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119110 Gm12447-001 ENSMUSG00000080816 10090 + 4:46327296-46327765 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverPlacentaTestisENSMUST00000119110
Transcript ID Bladder Brain Breast Liver Placenta Testis
ENSMUST00000119110 0.072±0.00 0.123±0.10 0.160±0.00 0.027±0.01 0.015±0.00 0.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AQ CIL_0009AQ_0002 VISTA 4:46052102-46653592
CIL_000853 CIL_000853_0002 VISTA 4:46066953-46671362
CIL_0009AR CIL_0009AR_0002 VISTA 4:46066953-46668597
CIL_00029U CIL_00029U_0002 CGP 4:46155347-46346412

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294189 RPL29-001 protein_coding Homo_sapiens 0 370
ENST00000413677 RP4-595K12.1-001 processed_pseudogene Homo_sapiens 0 320
ENST00000440227 RPL29P7-001 processed_pseudogene Homo_sapiens 0 302
ENST00000442089 RP5-1057J7.1-001 processed_pseudogene Homo_sapiens 0 298
ENST00000443998 RP11-632C17__A.1-001 processed_pseudogene Homo_sapiens 0 353
ENST00000446953 RP1-130G2.1-001 processed_pseudogene Homo_sapiens 0 265
ENST00000451924 RP11-42D20.1-001 processed_pseudogene Homo_sapiens 0 342
ENST00000463466 RP11-874G11.1-001 processed_pseudogene Homo_sapiens 0 237
ENST00000465069 RPL29P25-001 processed_pseudogene Homo_sapiens 0 217
ENST00000465434 RPL29P24-001 processed_pseudogene Homo_sapiens 0 302
ENST00000466397 RPL29-005 protein_coding Homo_sapiens 0 370
ENST00000475248 RPL29-008 protein_coding Homo_sapiens 0 370
ENST00000478358 RP11-490G8.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000479017 RPL29-009 protein_coding Homo_sapiens 0 370
ENST00000480306 RPL29-004 nonsense_mediated_decay Homo_sapiens 6e-34 148
ENST00000481629 RPL29-003 protein_coding Homo_sapiens 7e-34 148
ENST00000482584 RP11-342F17.1-001 processed_pseudogene Homo_sapiens 0 322
ENST00000486188 RPL29P23-001 processed_pseudogene Homo_sapiens 0 213
ENST00000486565 RPL29-002 retained_intron Homo_sapiens 0.0000000004 69
ENST00000486611 RPL29P3-001 processed_pseudogene Homo_sapiens 0 302
ENST00000492277 RPL29-007 protein_coding Homo_sapiens 0 370
ENST00000494408 RPL29P11-001 processed_pseudogene Homo_sapiens 0 359
ENST00000495383 RPL29-006 protein_coding Homo_sapiens 0 370
ENST00000496042 RP11-452G18.1-001 processed_pseudogene Homo_sapiens 0 206

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