C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 3329
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159873 Gm3329-001 ENSMUSG00000090147 10090 + 19:15943610-15944165 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverENSMUST00000159873
Transcript ID Bladder Brain Liver
ENSMUST00000159873 0.137±0.00 0.019±0.00 0.018±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007V7 CIL_0007V7_0002 VISTA 19:15500831-16104666
CIL_00091W CIL_00091W_0002 VISTA 19:15535662-16138956

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307839 RPL15-001 protein_coding Homo_sapiens 0 303
ENST00000354811 RPL15-007 protein_coding Homo_sapiens 0 303
ENST00000391491 RPL15P3-001 processed_pseudogene Homo_sapiens 0 287
ENST00000412097 RPL15-011 protein_coding Homo_sapiens 0 233
ENST00000413699 RPL15-002 protein_coding Homo_sapiens 0 303
ENST00000415719 RPL15-013 protein_coding Homo_sapiens 0 303
ENST00000416625 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000417590 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000419391 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000422218 RPL15-009 protein_coding Homo_sapiens 0 207
ENST00000422915 RP1-40G4P.1-001 processed_pseudogene Homo_sapiens 0 235
ENST00000429515 AC097523.1-001 processed_pseudogene Homo_sapiens 5.04467e-44 182
ENST00000432924 RPL15P18-001 processed_pseudogene Homo_sapiens 0 231
ENST00000434031 RPL15-014 protein_coding Homo_sapiens 0 250
ENST00000435882 RPL15-005 protein_coding Homo_sapiens 0 303
ENST00000436146 RPL15-008 nonsense_mediated_decay Homo_sapiens 0 193
ENST00000439829 AP002381.2-001 processed_pseudogene Homo_sapiens 5e-39 165
ENST00000445480 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000450413 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000451666 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000456043 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000456530 RPL15-201 protein_coding Homo_sapiens 0 207
ENST00000457032 RPL15P4-001 processed_pseudogene Homo_sapiens 1e-29 134
ENST00000465786 RPL15-006 retained_intron Homo_sapiens 0 193
ENST00000475247 RP11-214O14.1-001 processed_pseudogene Homo_sapiens 1e-39 167
ENST00000475768 AP000797.1-001 processed_pseudogene Homo_sapiens 2e-32 143
ENST00000477936 RP11-113C12.2-001 processed_pseudogene Homo_sapiens 5e-39 165
ENST00000482912 RPL15P20-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000487352 RP11-100N21.1-001 processed_pseudogene Homo_sapiens 0 261
ENST00000490223 RPL15-004 retained_intron Homo_sapiens 0 193
ENST00000490252 RPL15P2-001 processed_pseudogene Homo_sapiens 5e-39 165
ENST00000567709 RP11-151H2.3-001 processed_pseudogene Homo_sapiens 3e-38 161
ENST00000611050 RPL15-202 protein_coding Homo_sapiens 0 303

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