C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487352 RP11-100N21.1-001 ENSG00000242262 9606 + 4:47706372-47706987 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000487352
Transcript ID Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000487352 0.530±0.00 0.262±0.00 0.447±0.00 0.285±0.00 0.205±0.14 0.414±0.00 0.322±0.00 0.086±0.00 0.185±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008RD CIL_0008RD_0001 VISTA 4:47524449-48126035
CIL_0001MZ CIL_0001MZ_0001 CGP 4:47593998-47914667

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088480 Rpl15-ps3-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000112598 Rpl15-005 protein_coding Mus_musculus 0 848
ENSMUST00000079419 Rpl15-004 protein_coding Mus_musculus 0 848
ENSMUST00000100799 Rpl15-002 protein_coding Mus_musculus 0 848
ENSMUST00000080281 Rpl15-001 protein_coding Mus_musculus 0 848
ENSMUST00000105169 Gm4294-201 processed_pseudogene Mus_musculus 0 843
ENSMUST00000081993 Gm10020-201 protein_coding Mus_musculus 0 843
ENSMUST00000119496 Gm10224-001 processed_pseudogene Mus_musculus 0 826
ENSMUST00000184247 Rpl15-ps2-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000097103 Gm8420-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000120953 Gm13413-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000189382 RP23-277E3.1-001 processed_pseudogene Mus_musculus 0 734
ENSMUST00000121621 Gm12726-001 processed_pseudogene Mus_musculus 0 725
ENSMUST00000117717 Gm14094-001 processed_pseudogene Mus_musculus 0 712
ENSMUST00000121557 Gm13688-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000122161 Gm16210-001 processed_pseudogene Mus_musculus 0 678
ENSMUST00000117231 Gm11191-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000073317 Gm5292-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000118944 Gm15400-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000118237 Gm11500-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000120694 Rpl15-ps1-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000147121 Rpl15-003 protein_coding Mus_musculus 0 403
ENSMUST00000122372 Rpl15-ps4-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000159873 Gm3329-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000132957 Gm15733-001 processed_pseudogene Mus_musculus 0 196

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