C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 4B class IVb
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340384 TUBB4B-001 ENSG00000188229 9606 + 9:137241213-137243707 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340384
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340384 35.743±0.00 97.009±0.00 13.655±0.00 72.554±33.52 65.674±43.68 44.661±3.25 78.904±56.52 69.499±51.65 35.409±12.04 80.367±60.11 36.826±17.62 133.043±43.26 136.280±53.18 381.995±23.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003725 IDA double-stranded RNA binding
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0006928 TAS cellular component movement
GO:0007017 IEA microtubule-based process
GO:0031982 IDA vesicle
GO:0042267 NAS natural killer cell mediated cytotoxicity
GO:0042288 TAS MHC class I protein binding
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051082 NAS unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051225 IEA spindle assembly
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1862
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1676
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 1543
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1450
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1413
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1360
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1301
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1295
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1293
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1267
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1258
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1230
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1219
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1177
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1171
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1157
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 795

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