C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 2546
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182630 Gm2546-001 ENSMUSG00000098019 10090 + 7:89607706-89608696 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000182630
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000182630 0.422±0.27 0.228±0.07 0.282±0.01 0.156±0.08 0.781±0.80 0.136±0.03 0.567±0.18 0.520±0.64 0.260±0.13 0.114±0.02 0.410±0.10 0.154±0.09 0.268±0.08 0.045±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008U2 CIL_0008U2_0002 VISTA 7:89154519-89757634

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 431
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1171
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 955
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1146
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1171
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1171
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 488
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 924
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 870
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 976
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 846
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 292
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 571
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 845
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 771
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1046
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 883
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 675
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 822
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 568
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 689
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 782
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 625
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 612
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 619
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 4e-32 139
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 523
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 763
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1098
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 784
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 617
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 955
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 955
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 577
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 800
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 826
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 848
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 942
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 649
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 283
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 250
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 880
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 918
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 931
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 564
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 833
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 756
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 756
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 536
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1057

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