C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000451497 HMGB1P5-002 ENSG00000132967 9606 + 3:22381945-22382929 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000451497
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000451497 0.214±0.00 0.136±0.00 0.109±0.07 0.150±0.00 0.210±0.00 0.045±0.03 0.223±0.00 0.143±0.08 0.234±0.00 0.198±0.00 0.182±0.11 0.127±0.08 0.180±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 1201
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 1201
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 1188
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 828
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 676
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 671
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 665
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 665
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 660
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 590
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 584
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 577
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 499
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 468
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 353
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000155154 Ppm1e-002 processed_transcript Mus_musculus 0 298
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 259
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 228
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 5e-16 90
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0.00006 53

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