C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611897 RP11-19G24.3-002 ENSG00000275029 9606 - 17:37144136-37144463 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungOvaryTestisENST00000611897
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000611897 0.095±0.00 0.131±0.00 1.860±0.00 1.162±0.00 0.090±0.04 0.109±0.00 1.211±0.00 0.155±0.00 2.717±2.31 0.392±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085Q CIL_00085Q_0001 VISTA 17:36672050-37272645
CIL_00085M CIL_00085M_0001 VISTA 17:36678794-37279927
CIL_0008DP CIL_0008DP_0001 VISTA 17:36790335-37391543
CIL_0008GS CIL_0008GS_0001 VISTA 17:36817120-37418221
CIL_0005HT CIL_0005HT_0002 CGP 17:36948875-37406818
CIL_0005SZ CIL_0005SZ_0001 CGP 17:37084988-37406818
CIL_0007ND CIL_0007ND_006D UCNEbase 17:37142003-37150541

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 291
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 289
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 289
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 289
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 281
ENSMUST00000123645 Hmgb1-005 retained_intron Mus_musculus 0 268
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 207
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 206
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 204
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 187
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 1.96182e-44 182
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 1.96182e-44 182
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 1.96182e-44 182
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 1.96182e-44 182
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 8.96831e-44 180
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 2.99878e-43 178
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 2.99878e-43 178
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 3.99931e-42 174
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 3.99931e-42 174
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 9.99967e-42 172
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 4.99997e-41 171
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 4.99997e-41 171
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 4.99997e-41 171
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 4.99997e-41 171
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 2e-39 165
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 5e-36 154
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 2e-34 148
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 4e-32 141
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 4e-27 124
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 9e-19 97
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0.000000003 66

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