C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 31
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000437242 HMGB1P31-001 ENSG00000233266 9606 + 2:54051334-54051760 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000437242
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000437242 0.378±0.00 0.184±0.00 1.079±0.00 0.925±0.29 2.268±1.82 1.917±0.00 0.698±0.47 0.875±0.81 3.767±0.00 1.437±1.10 0.056±0.00 1.095±1.09 0.516±0.28 0.965±0.78

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 429
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 429
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 429
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 429
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 420
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 418
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000173370 Hmgb1-ps7-001 processed_pseudogene Mus_musculus 0 412
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 405
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 403
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 348
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000118469 Gm15778-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 329
ENSMUST00000120015 Gm6461-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 311
ENSMUST00000121589 Gm11645-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 296
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000184467 Gm7870-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 261
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 226
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 3e-39 165
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 3e-39 165
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 5e-37 158
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 2e-31 139
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0.000000000002 77
ENSMUST00000189012 RP23-338I1.1-001 processed_pseudogene Mus_musculus 0.00003 53

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