C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5908
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084017 Gm5908-201 ENSMUSG00000065950 10090 - 8:32476883-32477329 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000084017
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000084017 0.321±0.14 0.136±0.06 0.607±0.00 0.313±0.00 0.118±0.00 0.149±0.07 0.126±0.00 0.587±0.35 0.651±0.94 0.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KM CIL_0006KM_0002 CGP 8:31818028-33385527
CIL_0008L4 CIL_0008L4_0002 VISTA 8:32003658-32605872
CIL_0007TP CIL_0007TP_0002 VISTA 8:32004378-32605449

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314138 RPL27A-001 protein_coding Homo_sapiens 0 590
ENST00000358609 RPL27AP-001 processed_pseudogene Homo_sapiens 0 431
ENST00000415679 RP11-226L15.1-001 processed_pseudogene Homo_sapiens 0 381
ENST00000424277 RPL27AP8-001 processed_pseudogene Homo_sapiens 0 379
ENST00000448912 AC104076.2-001 processed_pseudogene Homo_sapiens 0 407
ENST00000469428 RPL27AP5-001 processed_pseudogene Homo_sapiens 0 473
ENST00000492974 RP11-475C16.1-001 processed_pseudogene Homo_sapiens 0 568
ENST00000524496 RPL27A-007 protein_coding Homo_sapiens 0 490
ENST00000525981 RPL27A-010 protein_coding Homo_sapiens 0 193
ENST00000526562 RPL27A-009 protein_coding Homo_sapiens 0 401
ENST00000529227 RPL27A-002 retained_intron Homo_sapiens 6e-23 111
ENST00000530022 RPL27A-008 protein_coding Homo_sapiens 0 586
ENST00000530585 RPL27A-003 retained_intron Homo_sapiens 0 193
ENST00000530913 RPL27A-011 protein_coding Homo_sapiens 0 401
ENST00000531978 RPL27A-004 protein_coding Homo_sapiens 0 403
ENST00000532359 RPL27A-006 protein_coding Homo_sapiens 0 263
ENST00000534599 RPL27A-005 nonsense_mediated_decay Homo_sapiens 0 490

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