C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000422509 RP11-405L18.4-001 ENSG00000230188 9606 - 9:37490421-37490893 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverLungMuscleOvaryPlacentaTestisENST00000422509
Transcript ID Adipose Adrenal Brain Colon Liver Lung Muscle Ovary Placenta Testis
ENST00000422509 0.057±0.00 0.061±0.00 0.059±0.00 0.835±0.00 0.081±0.00 0.336±0.00 0.215±0.00 0.189±0.00 0.117±0.00 0.079±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000843 CIL_000843_0001 VISTA 9:36915019-37515778
CIL_0008YP CIL_0008YP_0001 VISTA 9:36951210-37552226
CIL_00080S CIL_00080S_0001 VISTA 9:37036633-37638309
CIL_0001OS CIL_0001OS_0001 CGP 9:37438114-37503697
CIL_00039W CIL_00039W_0001 CGP 9:37485935-37576349

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 449
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 449
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 449
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 438
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 433
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 411
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 405
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 394
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 388
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 377
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 296
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 287
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 239
ENSMUST00000118625 Gm14602-001 processed_pseudogene Mus_musculus 0 226
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 211
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 6.00036e-42 174
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 2e-36 156
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 5e-23 111
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-17 94

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