C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000456309 RP11-317B3.2-001 ENSG00000237593 9606 + 6:154216931-154217489 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungOvaryENST00000456309
Transcript ID Adrenal Brain Breast Colon Heart Lung Ovary
ENST00000456309 0.306±0.00 0.341±0.00 0.394±0.00 0.797±0.00 0.042±0.00 0.066±0.00 0.094±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002QK CIL_0002QK_0002 CGP 6:153004459-154246867
CIL_00055K CIL_00055K_0001 CGP 6:154010496-154356792
CIL_0002QJ CIL_0002QJ_0002 CGP 6:154154496-154510659

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 440
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 429
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 420
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 407
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000121305 Gm11472-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 368
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 217

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