C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000464073 RP11-187O7.1-001 ENSG00000242952 9606 - 14:76634775-76635661 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000464073
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000464073 0.036±0.00 0.113±0.00 0.041±0.00 0.098±0.00 0.107±0.00 0.034±0.00 0.171±0.00 0.050±0.00 0.071±0.00 0.064±0.00 0.183±0.00 0.278±0.00 0.034±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007M1 CIL_0007M1_0001 UCNEbase 14:76034985-76675411
CIL_0003P4 CIL_0003P4_0001 CGP 14:76310614-76783015
CIL_0007VF CIL_0007VF_0001 VISTA 14:76618298-77221354
CIL_0008WP CIL_0008WP_0001 VISTA 14:76629854-77233554

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 1061
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 1050
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 965
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 941
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 941
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 904
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 632
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 0 248

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