C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000424470 HNRNPA3P15-001 ENSG00000225636 9606 + 2:197014990-197016015 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryTestisENST00000424470
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000424470 0.343±0.00 0.109±0.00 0.054±0.00 0.117±0.11 0.062±0.00 0.011±0.00 0.495±0.00 0.238±0.22 0.010±0.00 0.171±0.15 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002KE CIL_0002KE_0001 CGP 2:196833004-197311173
CIL_00042O CIL_00042O_0002 CGP 2:196967017-197435091
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1099
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 1096
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1096
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1096
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 1096
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 1096
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1088
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1085
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1074
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1072
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1072
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1046
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1027
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 1007
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 998
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 977
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 939
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 893
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 785
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 675
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 649
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 627
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 593
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000121177 Gm5383-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 219
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 211

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