C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4978
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000071565 Gm4978-201 ENSMUSG00000062874 10090 - 9:69450232-69451035 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverLungOvaryPlacentaTestisENSMUST00000071565
Transcript ID Adipose Bladder Brain Breast Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000071565 0.081±0.04 0.034±0.01 0.028±0.00 0.052±0.00 0.064±0.03 0.031±0.02 0.065±0.00 0.167±0.03 0.118±0.16 0.088±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LQ CIL_0007LQ_0002 UCNEbase 9:69347863-69845139

Gene Ontology

GO IDEvidence TypeGO Description
GO:0030529 IEA ribonucleoprotein complex
GO:0042254 IEA ribosome biogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393397 AC005042.2-001 processed_pseudogene Homo_sapiens 0 634
ENST00000396414 RP11-242C24.2-001 processed_pseudogene Homo_sapiens 0 560
ENST00000401715 RP3-486D24.1-001 processed_pseudogene Homo_sapiens 0 701
ENST00000418052 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 717
ENST00000427056 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 734
ENST00000430506 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 728
ENST00000430732 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 717
ENST00000437448 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 717
ENST00000441433 RPL7AP38-001 processed_pseudogene Homo_sapiens 0 606
ENST00000445592 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 728
ENST00000451600 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 717
ENST00000453429 RPL7AP7-001 processed_pseudogene Homo_sapiens 0 717
ENST00000473054 RP11-204K16.1-001 processed_pseudogene Homo_sapiens 0 684
ENST00000476420 RPL7AP56-001 processed_pseudogene Homo_sapiens 0 315
ENST00000477943 RPL7AP6-001 processed_pseudogene Homo_sapiens 0 833
ENST00000482859 RPL7AP30-001 processed_pseudogene Homo_sapiens 0 791
ENST00000483820 RPL7AP4-001 processed_pseudogene Homo_sapiens 0 573
ENST00000486538 RPL7AP11-001 processed_pseudogene Homo_sapiens 0 765
ENST00000496515 RPL7AP2-001 processed_pseudogene Homo_sapiens 0 520
ENST00000525465 RP11-58K22.2-001 processed_pseudogene Homo_sapiens 0 614
ENST00000541658 RPL7AP3-001 processed_pseudogene Homo_sapiens 0 462
ENST00000588490 RPL7AP66-001 processed_pseudogene Homo_sapiens 0 850

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