C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000525465 RP11-58K22.2-001 ENSG00000255106 9606 - 11:44539778-44540693 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryENST00000525465
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary
ENST00000525465 0.020±0.00 0.022±0.00 0.023±0.00 0.068±0.00 0.144±0.00 0.019±0.00 0.043±0.00 0.884±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UN CIL_0008UN_0001 VISTA 11:43968377-44572214

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 662
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 651
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 638
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 614
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 553
ENSMUST00000184700 Gm7863-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 544
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 536
ENSMUST00000119952 Gm15836-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000171395 Gm8425-001 processed_pseudogene Mus_musculus 0 496
ENSMUST00000188004 RP23-78M21.1-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000118973 Gm15617-001 processed_pseudogene Mus_musculus 0 490
ENSMUST00000185009 Gm14214-001 translated_processed_pseudogene Mus_musculus 0 483
ENSMUST00000188170 RP23-248N10.1-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 475
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 473
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000187766 RP23-223O13.2-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000184654 Gm14214-002 protein_coding Mus_musculus 0 451
ENSMUST00000118291 Gm16166-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000120981 Gm12593-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000119908 Gm9005-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000162331 Gm15812-001 unprocessed_pseudogene Mus_musculus 1e-20 104
ENSMUST00000121375 Gm11925-001 processed_pseudogene Mus_musculus 0.000000006 66

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