C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7a pseudogene 66
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000588490 RPL7AP66-001 ENSG00000175886 9606 - 18:39334872-39335672 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000588490
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000588490 0.121±0.00 0.235±0.00 0.079±0.04 0.123±0.07 0.174±0.08 0.024±0.00 0.138±0.00 0.024±0.00 0.124±0.09 0.230±0.00 0.063±0.03 0.071±0.01 0.147±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VI CIL_0003VI_0001 CGP 18:37243047-42087830
CIL_0007Q2 CIL_0007Q2_0001 VISTA 18:38883799-39484827

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000085365 Gm16477-001 processed_pseudogene Mus_musculus 0 942
ENSMUST00000118791 Rpl7a-ps11-001 processed_pseudogene Mus_musculus 0 937
ENSMUST00000190511 RP23-58N8.1-001 processed_pseudogene Mus_musculus 0 931
ENSMUST00000102898 Rpl7a-001 protein_coding Mus_musculus 0 931
ENSMUST00000090170 Rpl7a-ps3-201 protein_coding Mus_musculus 0 926
ENSMUST00000120676 Gm12712-001 processed_pseudogene Mus_musculus 0 920
ENSMUST00000190579 Rpl7a-ps10-001 processed_pseudogene Mus_musculus 0 909
ENSMUST00000094754 Rpl7a-ps8-201 protein_coding Mus_musculus 0 909
ENSMUST00000183380 Gm17828-001 processed_pseudogene Mus_musculus 0 893
ENSMUST00000095218 Rpl7a-ps5-201 protein_coding Mus_musculus 0 887
ENSMUST00000096427 Gm17415-001 processed_pseudogene Mus_musculus 0 876
ENSMUST00000071172 RP23-58N8.4-001 processed_pseudogene Mus_musculus 0 872
ENSMUST00000145247 Gm6286-001 processed_pseudogene Mus_musculus 0 870
ENSMUST00000189720 RP23-321G17.2-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000191231 RP24-217I2.2-001 processed_pseudogene Mus_musculus 0 857
ENSMUST00000071565 Gm4978-201 protein_coding Mus_musculus 0 850
ENSMUST00000119745 Gm13864-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000162120 Gm7418-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000118638 Gm13039-001 processed_pseudogene Mus_musculus 0 828
ENSMUST00000121575 Gm12630-001 processed_pseudogene Mus_musculus 0 808
ENSMUST00000120384 Rpl7a-ps12-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000119589 Gm16071-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000120032 Gm13666-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000117398 Gm8250-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000104977 Gm4877-201 protein_coding Mus_musculus 0 784
ENSMUST00000171235 Gm5459-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000122355 Gm11760-001 processed_pseudogene Mus_musculus 0 780
ENSMUST00000151645 Gm7847-001 processed_pseudogene Mus_musculus 0 778
ENSMUST00000185999 RP23-16N14.6-001 processed_pseudogene Mus_musculus 0 769
ENSMUST00000136269 Rpl7a-002 processed_transcript Mus_musculus 0 763
ENSMUST00000119629 Gm11979-001 processed_pseudogene Mus_musculus 0 741
ENSMUST00000117240 Gm11989-001 processed_pseudogene Mus_musculus 0 734
ENSMUST00000165944 RP24-170M24.1-001 processed_pseudogene Mus_musculus 0 715
ENSMUST00000137376 Rpl7a-004 processed_transcript Mus_musculus 0 715
ENSMUST00000139800 Gm5353-001 processed_pseudogene Mus_musculus 0 704
ENSMUST00000120236 Gm14141-001 processed_pseudogene Mus_musculus 0 699
ENSMUST00000120504 Gm12124-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000122273 Gm12269-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000118766 Gm16198-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000119203 Gm5759-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000118838 Gm11362-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000116081 Gm14853-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000117118 Rpl7a-ps9-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000118615 Gm13183-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000121538 Gm14156-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000143678 Rpl7a-003 processed_transcript Mus_musculus 0 484
ENSMUST00000117289 Gm16394-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000129673 Rpl7a-005 processed_transcript Mus_musculus 0 342
ENSMUST00000147143 Rpl7a-007 processed_transcript Mus_musculus 0 219
ENSMUST00000119982 Gm15007-001 processed_pseudogene Mus_musculus 0.0000000000008 79
ENSMUST00000149339 Rpl7a-006 processed_transcript Mus_musculus 0.000000000003 77

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