C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 41
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000459863 RPL21P41-001 ENSG00000214560 9606 + 3:66637149-66637412 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000459863
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000459863 0.602±0.00 0.050±0.00 0.097±0.00 0.045±0.00 0.095±0.00 0.048±0.00 0.182±0.00 0.184±0.00 0.137±0.00 1.317±0.00 0.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B3 CIL_0009B3_0001 VISTA 3:66275404-66878578
CIL_0003RC CIL_0003RC_0002 CGP 3:66378797-67011210

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 300
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 289
ENSMUST00000180224 Gm5445-201 processed_pseudogene Mus_musculus 0 289
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 289
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 289
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 289
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 283
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 283
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 279
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 278
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 278
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 270
ENSMUST00000117320 Gm15578-001 unprocessed_pseudogene Mus_musculus 0 267
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 255
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 255
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 250
ENSMUST00000118790 Gm11443-001 processed_pseudogene Mus_musculus 0 241
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 235
ENSMUST00000119803 Gm14877-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 215
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 207
ENSMUST00000078515 Gm10312-201 processed_pseudogene Mus_musculus 9e-38 159

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