C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477341 RP11-734J24.1-001 ENSG00000243181 9606 + 8:34874159-34874633 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000477341
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000477341 0.081±0.00 0.725±0.00 0.028±0.00 0.136±0.00 0.102±0.00 0.026±0.00 0.110±0.00 0.180±0.15 0.417±0.00 0.203±0.00 0.263±0.15 0.157±0.13 0.057±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00083R CIL_00083R_0001 VISTA 8:34698319-35301112

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 0 555
ENSMUST00000099272 Rpl21-003 protein_coding Mus_musculus 0 547
ENSMUST00000075453 Rpl21-002 protein_coding Mus_musculus 0 547
ENSMUST00000035983 Rpl21-001 protein_coding Mus_musculus 0 547
ENSMUST00000121545 Rpl21-ps15-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119140 Gm12411-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119328 Gm14648-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000155008 Gm10163-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000121309 Gm13370-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000089785 Gm10240-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000119332 Gm13604-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000160079 Gm3355-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000076314 Gm5528-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000084598 Gm10155-201 processed_pseudogene Mus_musculus 0 523
ENSMUST00000071237 Rpl21-ps10-201 processed_pseudogene Mus_musculus 0 523
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000121563 Gm15682-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 0 518
ENSMUST00000119897 Rpl21-ps9-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000080330 Gm10916-201 processed_pseudogene Mus_musculus 0 512
ENSMUST00000122260 Gm13653-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000080279 Rpl21-ps14-201 processed_pseudogene Mus_musculus 0 507
ENSMUST00000119542 Gm15921-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000095268 Gm9104-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000180049 Gm6919-001 processed_pseudogene Mus_musculus 0 501
ENSMUST00000093411 Gm8054-201 processed_pseudogene Mus_musculus 0 501
ENSMUST00000077420 Rpl21-ps7-201 processed_pseudogene Mus_musculus 0 496
ENSMUST00000179660 Gm16416-201 processed_pseudogene Mus_musculus 0 496
ENSMUST00000117861 Gm12760-001 processed_pseudogene Mus_musculus 0 494
ENSMUST00000081668 Rpl21-ps12-201 processed_pseudogene Mus_musculus 0 490
ENSMUST00000120607 Gm13525-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000117993 Gm13641-001 processed_pseudogene Mus_musculus 0 481
ENSMUST00000095940 Rpl21-ps5-201 processed_pseudogene Mus_musculus 0 479
ENSMUST00000153140 Gm16060-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000077278 Rpl21-ps11-201 processed_pseudogene Mus_musculus 0 473
ENSMUST00000119242 Gm14115-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000080097 Gm16415-001 processed_pseudogene Mus_musculus 0 468
ENSMUST00000120348 Gm12123-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000130905 Gm6689-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000121800 Gm8880-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000118790 Gm11443-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000074828 Rpl21-ps6-001 processed_pseudogene Mus_musculus 0 433
ENSMUST00000141391 Gm11281-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000120315 Gm9378-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000079153 Gm8526-201 processed_pseudogene Mus_musculus 0 411
ENSMUST00000080061 Gm8724-201 processed_pseudogene Mus_musculus 0 390
ENSMUST00000119262 Gm12944-001 processed_pseudogene Mus_musculus 0 372
ENSMUST00000122454 Gm8840-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000080237 Rpl21-ps4-201 protein_coding Mus_musculus 0 351
ENSMUST00000120458 Gm7071-001 processed_pseudogene Mus_musculus 0 267
ENSMUST00000117461 Gm14657-001 processed_pseudogene Mus_musculus 0 254
ENSMUST00000118827 Gm15312-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000121644 Gm15309-001 processed_pseudogene Mus_musculus 0 243
ENSMUST00000185232 RP23-478I8.1-001 processed_pseudogene Mus_musculus 0 228
ENSDART00000002595 rpl21-001 protein_coding Danio_rerio 0 200
ENSMUST00000120018 Gm13518-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000151871 Rpl21-005 retained_intron Mus_musculus 1.4013e-45 187
ENSMUST00000119221 Gm12934-001 processed_pseudogene Mus_musculus 8e-36 154
ENSMUST00000170118 Gm17113-001 processed_pseudogene Mus_musculus 8e-36 154
ENSMUST00000154768 Rpl21-004 retained_intron Mus_musculus 2e-21 106

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