C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bd
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000377777 HIST1H2BD-002 ENSG00000158373 9606 + 6:26158146-26158641 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000377777
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000377777 0.821±0.00 31.389±0.00 27.085±0.00 9.584±7.68 37.930±36.54 60.927±56.78 13.671±0.00 21.386±0.00 51.497±0.00 38.253±25.87 1.603±0.00 43.477±36.77 3.253±0.00 2.414±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001C0 CIL_0001C0_0003 CGP 6:26156391-26171349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 547
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 542
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 536
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 532
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 532
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 529
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 523
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 523
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 523
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 523
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 520
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 520
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 518
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 518
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 518
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 496
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 496
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 492
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 457
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 422
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 409
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 379
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 379
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 374
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 361
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 359
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 359
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 357
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 357
ENSDART00000123136 zgc:112234-203 protein_coding Danio_rerio 0 357
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 353
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 353
ENSDART00000109751 protein_coding Danio_rerio 0 340
ENSDART00000152388 zgc:171759-001 protein_coding Danio_rerio 0 340
ENSDART00000152449 zgc:171759-001 protein_coding Danio_rerio 0 339
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 337
ENSDART00000114942 zgc:171759-204 protein_coding Danio_rerio 0 335
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 333
ENSDART00000057788 zgc:171759-202 protein_coding Danio_rerio 0 331
ENSDART00000103017 zgc:171759-203 protein_coding Danio_rerio 0 331
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 329
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 327
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 327
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 326
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 324
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 322
ENSDART00000154377 si:dkey-261m9.6-001 protein_coding Danio_rerio 0 322
ENSDART00000143021 wu:fe11b02-208 protein_coding Danio_rerio 0 320
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 318
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 315
ENSDART00000145542 si:dkey-261m9.6-201 protein_coding Danio_rerio 0 315
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 311
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 309
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 309
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 300
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 292
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 254

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