C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bn
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000606613 HIST1H2BN-003 ENSG00000233822 9606 + 6:27838601-27855709 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000606613
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000606613 0.097±0.00 0.156±0.00 0.031±0.00 0.164±0.00 0.102±0.00 0.052±0.00 0.007±0.00 0.143±0.00 0.086±0.02 0.182±0.00 0.066±0.02 0.076±0.03 0.052±0.02 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UC CIL_0000UC_0008 CGP 6:27837760-27865798

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA:NAS nucleosome
GO:0003677 IEA:NAS DNA binding
GO:0005622 IEA intracellular
GO:0005634 IEA:IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 577
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 573
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 571
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 569
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 569
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 568
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 568
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 566
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 566
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 566
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 566
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 562
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 560
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 549
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 540
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 540
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 538
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 499
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 479
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 472
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 433
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 427
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 422
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 355
ENSDART00000152766 zgc:112234-001 protein_coding Danio_rerio 0 344
ENSDART00000103027 zgc:112234-201 protein_coding Danio_rerio 0 342
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 329
ENSDART00000143021 wu:fe11b02-208 protein_coding Danio_rerio 0 315
ENSDART00000121649 wu:fe11b02-203 protein_coding Danio_rerio 0 305
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 226

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