C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H2bc
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314332 HIST1H2BC-003 ENSG00000180596 9606 - 6:26114873-26123910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314332
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314332 0.568±0.00 0.843±0.00 1.263±0.00 1.389±0.00 0.278±0.00 1.186±0.00 0.554±0.00 4.551±0.00 5.754±0.00 1.646±0.07 1.402±0.24 4.531±1.49 2.888±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001C0 CIL_0001C0_0004 CGP 6:26107419-26123926
CIL_0000UC CIL_0000UC_0004 CGP 6:26114873-26139116

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 NAS:IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003677 NAS:IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006325 TAS chromatin organization
GO:0006334 NAS nucleosome assembly
GO:0019731 IDA antibacterial humoral response
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 560
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 556
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 556
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 545
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 545
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 540
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 540
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 540
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 540
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 536
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 536
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 534
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 532
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 529
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 529
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 525
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 521
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 490
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 464
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 462
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 431
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 429
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 427
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 385
ENSDART00000115210 ano9a-001 protein_coding Danio_rerio 0 366
ENSDART00000114598 ano9a-001 protein_coding Danio_rerio 0 366
ENSDART00000109751 protein_coding Danio_rerio 0 363
ENSDART00000156838 ano9a-001 protein_coding Danio_rerio 0 359
ENSDART00000152761 zgc:171759-001 protein_coding Danio_rerio 0 355
ENSDART00000129255 ano9a-201 protein_coding Danio_rerio 0 351
ENSDART00000146977 zgc:171759-209 protein_coding Danio_rerio 0 348
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 344
ENSDART00000113626 zgc:171759-205 protein_coding Danio_rerio 0 342
ENSDART00000157137 si:dkey-261m9.19-001 protein_coding Danio_rerio 0 339
ENSDART00000156508 zgc:173587-001 protein_coding Danio_rerio 0 335
ENSDART00000102959 si:dkey-261m9.19-201 protein_coding Danio_rerio 0 333
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 331
ENSDART00000126590 zgc:173587-201 protein_coding Danio_rerio 0 327
ENSDART00000130784 zgc:173587-202 protein_coding Danio_rerio 0 326
ENSDART00000114767 CABZ01086354.1-201 protein_coding Danio_rerio 0 324
ENSDART00000155850 zgc:171759-001 protein_coding Danio_rerio 0 322
ENSDART00000050237 zgc:171759-201 protein_coding Danio_rerio 0 320
ENSDART00000073457 zgc:194989-001 protein_coding Danio_rerio 0 318
ENSDART00000114327 wu:fe11b02-201 protein_coding Danio_rerio 0 316
ENSDART00000126724 wu:fe11b02-206 protein_coding Danio_rerio 0 315
ENSDART00000122306 wu:fe11b02-204 protein_coding Danio_rerio 0 315
ENSDART00000154655 zgc:171759-001 protein_coding Danio_rerio 0 315
ENSDART00000123848 wu:fe11b02-205 protein_coding Danio_rerio 0 311
ENSDART00000146289 zgc:171759-208 protein_coding Danio_rerio 0 307
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 254

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