C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2B histone family, member S (pseudogene)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000599962 H2BFS-001 ENSG00000234289 9606 + 21:43565189-43565648 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000599962
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000599962 2.374±0.00 7.456±0.00 0.860±0.00 1.825±0.00 10.851±4.77 1.074±0.00 1.478±0.00 2.820±0.00 7.252±0.26 0.718±0.22 11.910±11.70 13.419±0.00 2.641±0.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000617 CIL_000617_0001 CGP 21:43414515-43659493

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0002227 IDA innate immune response in mucosa
GO:0003677 IEA DNA binding
GO:0005615 IDA extracellular space
GO:0005622 IEA intracellular
GO:0005634 IDA:IEA nucleus
GO:0019731 IDA antibacterial humoral response
GO:0021762 IEP substantia nigra development
GO:0043565 IEA sequence-specific DNA binding
GO:0046982 IEA protein heterodimerization activity
GO:0050830 IDA defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018246 Hist1h2bc-001 protein_coding Mus_musculus 0 544
ENSMUST00000110455 Hist1h2bk-001 protein_coding Mus_musculus 0 536
ENSMUST00000110467 Hist1h2br-001 protein_coding Mus_musculus 0 532
ENSMUST00000110469 Hist1h2bq-001 protein_coding Mus_musculus 0 532
ENSMUST00000180288 Hist1h2br-201 protein_coding Mus_musculus 0 531
ENSMUST00000105106 Hist1h2bf-001 protein_coding Mus_musculus 0 531
ENSMUST00000079251 Hist1h2bg-001 protein_coding Mus_musculus 0 531
ENSMUST00000091749 Hist1h2bq-201 protein_coding Mus_musculus 0 531
ENSMUST00000110476 Hist1h2bm-001 protein_coding Mus_musculus 0 529
ENSMUST00000051091 Hist1h2be-001 protein_coding Mus_musculus 0 523
ENSMUST00000091704 Hist1h2be-002 protein_coding Mus_musculus 0 523
ENSMUST00000091756 Hist1h2bl-001 protein_coding Mus_musculus 0 523
ENSMUST00000110452 Hist1h2bj-001 protein_coding Mus_musculus 0 520
ENSMUST00000078156 Hist1h2bh-001 protein_coding Mus_musculus 0 518
ENSMUST00000091709 Hist1h2bn-001 protein_coding Mus_musculus 0 512
ENSMUST00000102982 Hist1h2bp-001 protein_coding Mus_musculus 0 501
ENSMUST00000110473 Hist1h2bp-002 protein_coding Mus_musculus 0 499
ENSMUST00000099703 Hist1h2bb-001 protein_coding Mus_musculus 0 490
ENSMUST00000177113 Hist2h2bb-001 protein_coding Mus_musculus 0 468
ENSMUST00000117835 Gm12957-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000078267 Hist3h2ba-001 protein_coding Mus_musculus 0 429
ENSDART00000109316 zgc:112234-202 protein_coding Danio_rerio 0 425
ENSMUST00000117558 Hist3h2bb-ps-001 processed_pseudogene Mus_musculus 0 424
ENSDART00000124016 zgc:112234-205 protein_coding Danio_rerio 0 414
ENSDART00000128030 zgc:112234-204 protein_coding Danio_rerio 0 414
ENSMUST00000090781 Hist2h2be-001 protein_coding Mus_musculus 0 399
ENSMUST00000052776 Hist1h2ba-001 protein_coding Mus_musculus 0 399
ENSDART00000152735 zgc:171759-001 protein_coding Danio_rerio 0 344
ENSDART00000136970 zgc:171759-210 protein_coding Danio_rerio 0 311
ENSMUST00000051089 Hist2h2bb-201 protein_coding Mus_musculus 0 270

Loading