C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 4609
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106443 Gm4609-001 ENSMUSG00000078592 10090 - 3:122230195-122231196 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106443
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106443 0.222±0.06 0.083±0.05 0.302±0.12 5.462±5.42 0.715±0.78 0.128±0.06 0.406±0.19 0.593±0.14 1.845±5.68 0.101±0.09 0.773±0.29 0.197±0.11 0.130±0.07 0.040±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009DI CIL_0009DI_0002 VISTA 3:121653542-122254391
CIL_0009DJ CIL_0009DJ_0002 VISTA 3:121747471-122349247
CIL_0009DH CIL_0009DH_0002 VISTA 3:121992915-122594267

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058384 gapdhs-001 protein_coding Danio_rerio 0 472
ENST00000229239 GAPDH-001 protein_coding Homo_sapiens 0 1254
ENST00000396856 GAPDH-004 protein_coding Homo_sapiens 0 977
ENST00000396858 GAPDH-008 protein_coding Homo_sapiens 0 1229
ENST00000396859 GAPDH-003 protein_coding Homo_sapiens 0 1254
ENST00000396861 GAPDH-002 protein_coding Homo_sapiens 0 1254
ENST00000398586 GAPDHP15-001 processed_pseudogene Homo_sapiens 0 571
ENST00000402643 GAPDHP72-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000403475 RP11-378G13.2-001 processed_pseudogene Homo_sapiens 0 942
ENST00000405405 GAPDHP63-001 processed_pseudogene Homo_sapiens 0 1051
ENST00000419696 GAPDHP64-001 processed_pseudogene Homo_sapiens 0 928
ENST00000422905 GAPDHP67-001 processed_pseudogene Homo_sapiens 0 335
ENST00000423136 GAPDHP55-001 processed_pseudogene Homo_sapiens 0 652
ENST00000423411 GAPDHP73-001 processed_pseudogene Homo_sapiens 0 915
ENST00000424043 GAPDHP46-001 processed_pseudogene Homo_sapiens 0 865
ENST00000425487 GAPDHP65-001 processed_pseudogene Homo_sapiens 0 1133
ENST00000425504 GAPDHP69-001 processed_pseudogene Homo_sapiens 0 961
ENST00000426454 GAPDHP51-001 processed_pseudogene Homo_sapiens 0 774
ENST00000429913 GAPDHP29-001 processed_pseudogene Homo_sapiens 0 680
ENST00000432206 GAPDHP2-001 processed_pseudogene Homo_sapiens 0 905
ENST00000436626 GAPDHP48-001 processed_pseudogene Homo_sapiens 0 628
ENST00000436818 GAPDHP26-001 processed_pseudogene Homo_sapiens 0 765
ENST00000438477 GAPDHP58-001 processed_pseudogene Homo_sapiens 0 865
ENST00000442317 GAPDHP37-001 processed_pseudogene Homo_sapiens 0 701
ENST00000444107 GAPDHP20-001 processed_pseudogene Homo_sapiens 0 693
ENST00000444823 GAPDHP23-001 processed_pseudogene Homo_sapiens 0 689
ENST00000445880 RP1-52D1.1-001 processed_pseudogene Homo_sapiens 9e-34 145
ENST00000447427 GAPDHP27-001 processed_pseudogene Homo_sapiens 0 595
ENST00000450301 GAPDHP21-001 processed_pseudogene Homo_sapiens 0 857
ENST00000450472 GAPDHP14-001 processed_pseudogene Homo_sapiens 0 531
ENST00000452570 GAPDHP1-001 processed_pseudogene Homo_sapiens 0 1179
ENST00000455134 GAPDHP28-001 processed_pseudogene Homo_sapiens 0 870
ENST00000466525 GAPDH-007 retained_intron Homo_sapiens 0 634
ENST00000466588 GAPDH-005 retained_intron Homo_sapiens 0 977
ENST00000474249 GAPDH-006 retained_intron Homo_sapiens 0 977
ENST00000481866 GAPDHP39-001 processed_pseudogene Homo_sapiens 0 664
ENST00000492719 GAPDH-011 retained_intron Homo_sapiens 0 878
ENST00000503632 GAPDHP38-001 processed_pseudogene Homo_sapiens 0 926
ENST00000505218 GAPDHP40-001 processed_pseudogene Homo_sapiens 0 931
ENST00000507324 GAPDHP61-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000509325 GAPDHP31-001 processed_pseudogene Homo_sapiens 0 704
ENST00000512110 AC007016.3-001 processed_pseudogene Homo_sapiens 0 300
ENST00000512278 GAPDHP76-001 unprocessed_pseudogene Homo_sapiens 0 315
ENST00000513369 RP11-159J3.1-001 processed_pseudogene Homo_sapiens 0 935
ENST00000513513 GAPDHP44-001 processed_pseudogene Homo_sapiens 0 974
ENST00000513846 GAPDHP60-001 processed_pseudogene Homo_sapiens 0 1007
ENST00000513953 RP11-44N17.1-001 processed_pseudogene Homo_sapiens 0 647
ENST00000515313 GAPDHP62-001 processed_pseudogene Homo_sapiens 0 904
ENST00000520713 ANKRD46-009 processed_transcript Homo_sapiens 0 793
ENST00000524319 ANKRD46-003 processed_transcript Homo_sapiens 0 793
ENST00000613707 RP11-343D24.1-001 processed_pseudogene Homo_sapiens 0 619
ENST00000619601 GAPDH-201 protein_coding Homo_sapiens 0 1109

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