C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 36
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000487709 HMGB1P36-001 ENSG00000243873 9606 + 3:70753854-70754573 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LungENST00000487709
Transcript ID Lung
ENST00000487709 0.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L4 CIL_0007L4_0001 UCNEbase 3:70042617-71525233
CIL_0009A6 CIL_0009A6_0001 VISTA 3:70216091-70817701
CIL_00094D CIL_00094D_0001 VISTA 3:70352338-70953753
CIL_0009A7 CIL_0009A7_0001 VISTA 3:70522165-71123806
CIL_0008N6 CIL_0008N6_0001 VISTA 3:70677078-71277613
CIL_00096K CIL_00096K_0001 VISTA 3:70685238-71286279
CIL_0007PZ CIL_0007PZ_0001 VISTA 3:70703225-71304095
CIL_0008OZ CIL_0008OZ_0001 VISTA 3:70750006-71351700

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 399
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 394
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 394
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 394
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 388
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 388
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 383
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 377
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 375
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 320
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 313
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 305
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 291
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 281
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 274
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 272
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 259
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 237
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 235
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 193
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 2e-37 159
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 1e-30 137
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 6e-28 128
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 1e-24 117

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