C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1 pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402555 HMGB1P20-001 ENSG00000219163 9606 - 6:53235621-53236297 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402555
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402555 0.122±0.00 0.483±0.00 0.178±0.00 0.185±0.14 0.121±0.00 0.165±0.00 0.382±0.00 0.104±0.00 0.347±0.16 0.201±0.00 1.323±1.72 1.646±0.00 0.918±0.53

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000178049 Gm21596-201 processed_pseudogene Mus_musculus 0 625
ENSMUST00000085546 Hmgb1-001 protein_coding Mus_musculus 0 625
ENSMUST00000179821 RP24-388H6.4-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000084171 Gm5518-201 processed_pseudogene Mus_musculus 0 582
ENSMUST00000118415 Hmgb1-ps3-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000093196 Hmgb1-002 protein_coding Mus_musculus 0 579
ENSMUST00000110505 Hmgb1-003 protein_coding Mus_musculus 0 579
ENSMUST00000120421 Gm15387-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000119715 Gm5937-001 processed_pseudogene Mus_musculus 0 571
ENSMUST00000179479 Hmgb1-ps9-201 processed_pseudogene Mus_musculus 0 555
ENSMUST00000118281 Hmgb1-ps4-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000119503 Hmgb1-ps6-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000119927 Gm12331-001 processed_pseudogene Mus_musculus 0 534
ENSMUST00000179326 Gm5473-201 processed_pseudogene Mus_musculus 0 508
ENSMUST00000121058 Hmgb1-ps5-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000139443 Hmgb1-006 retained_intron Mus_musculus 0 507
ENSMUST00000117362 Gm12568-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000162030 AC098736.2-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000119126 Gm9078-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117107 Gm15560-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000181542 Hmgb1-ps8-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000118053 Gm13379-001 processed_pseudogene Mus_musculus 0 477
ENSMUST00000120175 Gm11830-001 processed_pseudogene Mus_musculus 0 457
ENSMUST00000182688 Gm7909-001 processed_pseudogene Mus_musculus 0 455
ENSMUST00000117940 Hmgb1-rs18-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000120168 Gm13902-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000122269 Gm14473-001 processed_pseudogene Mus_musculus 0 435
ENSMUST00000190177 RP24-229N7.1-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000121222 Gm5396-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000121009 Gm14049-001 processed_pseudogene Mus_musculus 0 416
ENSMUST00000133667 Hmgb1-004 retained_intron Mus_musculus 0 405
ENSMUST00000119766 Gm12118-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000183926 Gm27254-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000138553 Hmgb1-007 protein_coding Mus_musculus 0 392
ENSMUST00000125605 Hmgb1-008 protein_coding Mus_musculus 0 374
ENSMUST00000117499 Gm12261-001 processed_pseudogene Mus_musculus 0 355
ENSMUST00000120970 Gm15750-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000186576 RP24-241N3.1-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000116383 Gm14448-001 processed_pseudogene Mus_musculus 0 209

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