C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 12331
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119927 Gm12331-001 ENSMUSG00000081932 10090 - 11:74077519-74078140 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMuscleOvaryPlacentaTestisENSMUST00000119927
Transcript ID Bladder Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000119927 0.075±0.00 0.062±0.01 0.101±0.01 0.066±0.00 0.442±0.16 0.081±0.07 0.030±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 774
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 588
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 787
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 787
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 675
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 588
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 787
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 534
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 787
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 497
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 649
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 396
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 411
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 597
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 363
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 713
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 758
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 641

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