C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 11830
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120175 Gm11830-001 ENSMUSG00000081490 10090 + 4:11144710-11145270 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000120175
Transcript ID Bladder Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000120175 0.018±0.00 0.111±0.01 0.428±0.16 0.043±0.00 0.155±0.05 0.132±0.04 0.119±0.10 0.087±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SX CIL_0006SX_0002 CGP 4:11051045-11174379

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 628
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 521
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 623
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 623
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 582
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 521
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 623
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 457
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 623
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 442
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 534
ENST00000435986 HMGB1P45-001 processed_pseudogene Homo_sapiens 0 381
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 322
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 484
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 195
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 291
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 529

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