C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein SA pseudogene 55
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000477347 RPSAP55-001 ENSG00000214896 9606 + 15:52885595-52886470 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMusclePlacentaTestisENST00000477347
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Placenta Testis
ENST00000477347 0.018±0.00 0.075±0.00 0.020±0.00 0.058±0.00 0.018±0.00 0.042±0.02 0.017±0.00 0.018±0.00 0.016±0.00 0.038±0.00 0.028±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007K3 CIL_0007K3_0001 UCNEbase 15:52752889-53754980

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000057740 Rpsa-ps10-201 protein_coding Mus_musculus 0 926
ENSMUST00000035105 Rpsa-201 protein_coding Mus_musculus 0 915
ENSMUST00000121691 Rpsa-ps4-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000120702 Rpsa-ps9-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000120596 Rpsa-ps12-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000120191 Gm11824-001 processed_pseudogene Mus_musculus 0 835
ENSMUST00000191040 Rpsa-ps1-001 processed_pseudogene Mus_musculus 0 822
ENSMUST00000118446 Rpsa-ps11-001 processed_pseudogene Mus_musculus 0 789
ENSMUST00000120423 Gm9083-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000186198 RP23-2I19.1-001 processed_pseudogene Mus_musculus 0 658
ENSMUST00000118817 Gm5764-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000059546 Rpsa-ps2-201 processed_pseudogene Mus_musculus 0 542
ENSDART00000135945 rpsa-001 protein_coding Danio_rerio 0 433
ENSMUST00000162286 Gm16228-001 processed_pseudogene Mus_musculus 5.60519e-45 185

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