C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 4A class IVa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540257 TUBB4A-201 ENSG00000104833 9606 - 19:6494321-6502293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungOvaryPlacentaENST00000540257
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Ovary Placenta
ENST00000540257 0.402±0.00 0.126±0.00 0.381±0.00 26.896±0.00 0.849±0.00 0.283±0.00 0.164±0.08 0.111±0.00 0.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061U CIL_00061U_0001 CGP 19:6467207-6502848

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000278 TAS mitotic cell cycle
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005874 IEA:IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1589
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1546
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 1493
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1362
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1336
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1327
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1319
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1314
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1293
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1290
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1288
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1245
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1238
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1210
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 669
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 628
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 582

Loading