C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000610837 RP11-19G24.1-001 ENSG00000274308 9606 - 17:37140611-37141424 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLiverLungMuscleOvaryTestisENST00000610837
Transcript ID Adipose Adrenal Brain Breast Kidney Liver Lung Muscle Ovary Testis
ENST00000610837 0.069±0.00 0.196±0.00 0.055±0.00 0.326±0.27 0.075±0.00 0.506±0.00 0.185±0.07 0.021±0.00 0.126±0.06 0.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085Q CIL_00085Q_0001 VISTA 17:36672050-37272645
CIL_00085M CIL_00085M_0001 VISTA 17:36678794-37279927
CIL_0008DP CIL_0008DP_0001 VISTA 17:36790335-37391543
CIL_0008GS CIL_0008GS_0001 VISTA 17:36817120-37418221
CIL_0005HT CIL_0005HT_0002 CGP 17:36948875-37406818
CIL_0005SZ CIL_0005SZ_0001 CGP 17:37084988-37406818
CIL_0007ND CIL_0007ND_006C UCNEbase 17:37130591-37142002

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 662
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 656
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 656
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 652
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 645
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 645
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 641
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 640
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 640
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 640
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 628
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 614
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 608
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 520
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 518
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 484
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 481
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 481
ENSMUST00000119349 Gm11524-001 processed_pseudogene Mus_musculus 0 381
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 363
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 305
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 2e-29 134
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 0.000000000000005 86

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