C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000293308 KRT8-002 ENSG00000170421 9606 - 12:52897194-52905072 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000293308
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000293308 3.558±0.00 3.499±0.00 4.980±0.00 0.718±0.00 30.611±4.78 101.049±3.01 14.389±12.28 91.705±60.36 68.175±52.79 71.890±64.23 0.344±0.00 164.761±137.34 1056.576±517.25 13.333±7.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038V CIL_00038V_0001 CGP 12:52837804-52949954
CIL_0006T8 CIL_0006T8_0001 CGP 12:52897187-52952901

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005882 IDA:IEA intermediate filament
GO:0016032 IEA viral process
GO:0070062 IDA extracellular vesicular exosome
GO:0097110 IPI scaffold protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 1591
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 652
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 593
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0 538
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 516
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 449
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 448
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 416
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 394
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 392
ENSMUST00000023797 Krt4-201 protein_coding Mus_musculus 0 364
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 331
ENSMUST00000023720 Krt84-201 protein_coding Mus_musculus 0 309
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 0 202
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 9.94922e-44 182
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 3e-40 171
ENSDART00000137533 krt8-003 retained_intron Danio_rerio 4e-24 117
ENSMUST00000077902 Gfap-201 protein_coding Mus_musculus 2e-22 111
ENSMUST00000067444 Gfap-001 protein_coding Mus_musculus 2e-22 111
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 2e-22 111
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 2e-22 111
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.0000007 60

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