C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 8 pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000519669 KRT8P3-001 ENSG00000254285 9606 + 8:61578220-61579668 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonKidneyLiverLungOvaryPlacentaENST00000519669
Transcript ID Brain Breast Colon Kidney Liver Lung Ovary Placenta
ENST00000519669 0.035±0.00 0.154±0.02 0.046±0.00 0.084±0.00 0.029±0.00 0.118±0.00 0.062±0.06 0.237±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GG CIL_0003GG_0001 CGP 8:61057158-61714640

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023952 Krt8-201 protein_coding Mus_musculus 0 1459
ENSMUST00000023714 4732456N10Rik-001 protein_coding Mus_musculus 0 597
ENSMUST00000023709 Krt5-001 protein_coding Mus_musculus 0 523
ENSDART00000081215 krt8-001 protein_coding Danio_rerio 0 521
ENSMUST00000068904 Krt7-001 protein_coding Mus_musculus 0 479
ENSMUST00000023788 Krt6a-201 protein_coding Mus_musculus 0 418
ENSMUST00000023786 Krt6b-201 protein_coding Mus_musculus 0 409
ENSMUST00000100179 Krt76-001 protein_coding Mus_musculus 0 398
ENSMUST00000131069 Krt7-002 retained_intron Mus_musculus 0 372
ENSMUST00000042957 Krt75-001 protein_coding Mus_musculus 0 363
ENSMUST00000023799 Krt79-001 protein_coding Mus_musculus 0 298
ENSMUST00000023720 Krt84-201 protein_coding Mus_musculus 0 278
ENSMUST00000100184 Gm5478-201 protein_coding Mus_musculus 3.9937e-43 180
ENSMUST00000087996 Krt77-001 protein_coding Mus_musculus 7.00005e-41 172
ENSMUST00000147662 Krt7-003 protein_coding Mus_musculus 5e-37 159
ENSDART00000137533 krt8-003 retained_intron Danio_rerio 2e-27 128
ENSMUST00000077902 Gfap-201 protein_coding Mus_musculus 2e-22 111
ENSMUST00000067444 Gfap-001 protein_coding Mus_musculus 2e-22 111
ENSMUST00000148248 Vim-004 retained_intron Mus_musculus 3e-19 100
ENSMUST00000028062 Vim-001 protein_coding Mus_musculus 3e-19 100
ENSDART00000028270 gfap-001 protein_coding Danio_rerio 0.000002 58

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