C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000468126 RP11-324J13.1-001 ENSG00000213851 9606 - 4:43410041-43410937 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000468126
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000468126 0.263±0.00 0.229±0.00 0.060±0.00 0.056±0.00 0.173±0.00 0.047±0.00 0.106±0.00 0.068±0.00 0.025±0.00 0.240±0.00 0.137±0.00 0.061±0.00 0.166±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Z1 CIL_0002Z1_0001 CGP 4:42893267-44448807

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 793
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 793
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 789
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 787
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 787
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 771
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 747
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 736
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 734
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 726
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 721
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 719
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 710
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 706
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 682
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 669
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 664
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 651
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 621
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 612
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 612
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 612
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 592
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 545
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 542
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 542
ENSMUST00000122809 Rps2-004 retained_intron Mus_musculus 0 536
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 531
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000121977 Rps2-ps4-001 processed_pseudogene Mus_musculus 0 503
ENSMUST00000117930 Gm13094-001 processed_pseudogene Mus_musculus 0 436
ENSMUST00000129984 Rps2-007 retained_intron Mus_musculus 0 357
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 311
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 3e-33 147
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 6e-25 119

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