C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 44
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000478038 RPS2P44-001 ENSG00000243609 9606 - 16:48577524-48578369 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000478038
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000478038 0.022±0.00 0.189±0.00 0.027±0.00 0.286±0.00 0.065±0.04 0.029±0.01 0.097±0.00 0.195±0.17 0.061±0.00 0.121±0.06 0.056±0.00 0.182±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VO CIL_0002VO_0001 CGP 16:48538726-49281831

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 628
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000132939 Gm9013-001 processed_pseudogene Mus_musculus 0 628
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 625
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 623
ENSMUST00000170715 Rps2-201 protein_coding Mus_musculus 0 623
ENSMUST00000054289 Rps2-001 protein_coding Mus_musculus 0 623
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 617
ENSMUST00000121713 Gm10420-001 processed_pseudogene Mus_musculus 0 612
ENSMUST00000186517 RP23-128A11.3-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 603
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 601
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 601
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 593
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 593
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 584
ENSMUST00000146867 Rps2-002 protein_coding Mus_musculus 0 575
ENSMUST00000119653 Gm16148-001 processed_pseudogene Mus_musculus 0 566
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 558
ENSMUST00000152407 Rps2-003 protein_coding Mus_musculus 0 553
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 549
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000121420 Gm12176-001 processed_pseudogene Mus_musculus 0 538
ENSMUST00000121414 Rps2-ps9-001 processed_pseudogene Mus_musculus 0 527
ENSMUST00000139570 Gm10653-001 transcribed_processed_pseudogene Mus_musculus 0 492
ENSMUST00000156423 Gm10653-003 processed_transcript Mus_musculus 0 492
ENSMUST00000132250 Gm10653-002 processed_transcript Mus_musculus 0 492
ENSMUST00000120626 Gm12922-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000119578 Gm11643-001 processed_pseudogene Mus_musculus 0 466
ENSMUST00000129580 Rps2-005 retained_intron Mus_musculus 0 457
ENSMUST00000159783 Gm8194-001 processed_pseudogene Mus_musculus 0 449
ENSMUST00000161130 Gm9550-001 processed_pseudogene Mus_musculus 0 440
ENSMUST00000121348 Gm7638-001 processed_pseudogene Mus_musculus 0 385
ENSMUST00000116032 Gm16073-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000187136 RP23-258M15.4-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 307
ENSMUST00000118606 Gm3943-001 processed_pseudogene Mus_musculus 0 230
ENSMUST00000119396 Gm12959-001 processed_pseudogene Mus_musculus 5e-30 135
ENSMUST00000173358 Gm20396-001 processed_pseudogene Mus_musculus 9e-23 111

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