C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402069 RP3-337H4.6-001 ENSG00000219470 9606 - 6:43538822-43539703 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402069
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402069 0.248±0.00 0.591±0.00 0.173±0.00 0.117±0.06 0.130±0.00 0.456±0.37 0.087±0.06 0.312±0.00 0.159±0.13 0.315±0.29 0.367±0.27 0.332±0.10 0.194±0.10 0.067±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 996
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 996
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 992
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 963
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 961
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 946
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 928
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 904
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 898
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 894
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 885
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 869
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 854
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 830
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 809
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 809
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 754
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 725
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 684
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 684
ENSMUST00000119349 Gm11524-001 processed_pseudogene Mus_musculus 0 470
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000116022 Gm15846-001 processed_pseudogene Mus_musculus 0 361
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 0 222
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 3e-33 147

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