C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5786
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085368 Gm5786-201 ENSMUSG00000066487 10090 + 12:59081019-59081900 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085368
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085368 1.741±0.39 0.566±0.20 6.684±5.71 1.662±1.81 1.432±0.45 1.227±0.76 0.914±0.21 0.888±0.17 4.506±6.27 0.722±0.20 0.218±0.09 1.610±0.94 0.441±0.32 0.268±0.14

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314255 RPS2P28-001 processed_pseudogene Homo_sapiens 0 708
ENST00000343262 RPS2-001 protein_coding Homo_sapiens 0 996
ENST00000393351 RP5-1106E3.1-001 processed_pseudogene Homo_sapiens 0 780
ENST00000397318 RPS2P55-001 processed_pseudogene Homo_sapiens 0 952
ENST00000402069 RP3-337H4.6-001 processed_pseudogene Homo_sapiens 0 963
ENST00000423464 RP11-183G22.1-001 processed_pseudogene Homo_sapiens 0 824
ENST00000428058 CTD-2666L21.2-001 processed_pseudogene Homo_sapiens 0 789
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 0 730
ENST00000434010 RPS2P1-001 processed_pseudogene Homo_sapiens 0 752
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 0 641
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 771
ENST00000441047 RPS2P48-001 processed_pseudogene Homo_sapiens 0 867
ENST00000442812 RP11-377K22.2-001 processed_pseudogene Homo_sapiens 8.99999e-40 165
ENST00000443417 RPS2P35-001 processed_pseudogene Homo_sapiens 0 813
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 0 660
ENST00000447422 RP11-109P14.8-001 processed_pseudogene Homo_sapiens 0 501
ENST00000449856 AC022210.2-001 processed_pseudogene Homo_sapiens 0 900
ENST00000459634 RP11-192C21.1-001 processed_pseudogene Homo_sapiens 0 697
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 0 771
ENST00000474589 RP11-713P14.1-001 processed_pseudogene Homo_sapiens 0 617
ENST00000475555 RP11-364L4.1-001 processed_pseudogene Homo_sapiens 3e-22 110
ENST00000478038 RPS2P44-001 processed_pseudogene Homo_sapiens 0 601
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 0 743
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 889
ENST00000488803 RPS2P5-001 processed_pseudogene Homo_sapiens 0 987
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 0 728
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 0 610
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 0 741
ENST00000526522 RPS2-006 protein_coding Homo_sapiens 0 399
ENST00000526586 RPS2-015 protein_coding Homo_sapiens 0 204
ENST00000527109 RPS2-005 retained_intron Homo_sapiens 0 396
ENST00000527871 RPS2-004 retained_intron Homo_sapiens 0 396
ENST00000529806 RPS2-008 protein_coding Homo_sapiens 0 723
ENST00000530225 RPS2-017 protein_coding Homo_sapiens 0 204
ENST00000531065 RPS2-003 retained_intron Homo_sapiens 0 745
ENST00000532746 RPS2-012 nonsense_mediated_decay Homo_sapiens 0 745
ENST00000533161 RPS2-002 retained_intron Homo_sapiens 0 396
ENST00000533186 RPS2-013 protein_coding Homo_sapiens 0 619
ENST00000533872 RPS2-011 retained_intron Homo_sapiens 0 617
ENST00000554490 RPS2P2-001 processed_pseudogene Homo_sapiens 0 636
ENST00000610837 RP11-19G24.1-001 processed_pseudogene Homo_sapiens 0 645
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 0 760

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