C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6576
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169678 Gm6576-201 ENSMUSG00000090544 10090 + 15:27025386-27026207 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000169678
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000169678 0.213±0.11 0.184±0.02 1.833±1.68 0.486±0.47 0.272±0.18 0.229±0.14 0.092±0.08 0.227±0.19 0.904±1.77 0.289±0.07 0.368±0.26 0.795±1.12 0.149±0.08

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0015935 IEA small ribosomal subunit

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314255 RPS2P28-001 processed_pseudogene Homo_sapiens 0 686
ENST00000343262 RPS2-001 protein_coding Homo_sapiens 0 913
ENST00000393351 RP5-1106E3.1-001 processed_pseudogene Homo_sapiens 0 726
ENST00000397318 RPS2P55-001 processed_pseudogene Homo_sapiens 0 869
ENST00000402069 RP3-337H4.6-001 processed_pseudogene Homo_sapiens 0 885
ENST00000423464 RP11-183G22.1-001 processed_pseudogene Homo_sapiens 0 795
ENST00000428058 CTD-2666L21.2-001 processed_pseudogene Homo_sapiens 0 761
ENST00000433054 RP11-1O7.1-001 processed_pseudogene Homo_sapiens 0 689
ENST00000434010 RPS2P1-001 processed_pseudogene Homo_sapiens 0 739
ENST00000436136 RP11-16L9.1-001 processed_pseudogene Homo_sapiens 0 608
ENST00000438210 RP3-342P20.2-001 processed_pseudogene Homo_sapiens 0 752
ENST00000441047 RPS2P48-001 processed_pseudogene Homo_sapiens 0 830
ENST00000442812 RP11-377K22.2-001 processed_pseudogene Homo_sapiens 4e-38 159
ENST00000443417 RPS2P35-001 processed_pseudogene Homo_sapiens 0 793
ENST00000445918 RP11-388B24.4-001 processed_pseudogene Homo_sapiens 0 641
ENST00000447422 RP11-109P14.8-001 processed_pseudogene Homo_sapiens 0 492
ENST00000449856 AC022210.2-001 processed_pseudogene Homo_sapiens 0 876
ENST00000457299 AC087163.2-001 processed_pseudogene Homo_sapiens 0 610
ENST00000459634 RP11-192C21.1-001 processed_pseudogene Homo_sapiens 0 673
ENST00000468126 RP11-324J13.1-001 processed_pseudogene Homo_sapiens 0 726
ENST00000474589 RP11-713P14.1-001 processed_pseudogene Homo_sapiens 0 595
ENST00000478038 RPS2P44-001 processed_pseudogene Homo_sapiens 0 603
ENST00000479476 RPS2P6-001 processed_pseudogene Homo_sapiens 0 706
ENST00000480705 RP11-296A18.5-001 processed_pseudogene Homo_sapiens 0 854
ENST00000488803 RPS2P5-001 processed_pseudogene Homo_sapiens 0 907
ENST00000488906 RP5-867C24.1-001 processed_pseudogene Homo_sapiens 0 712
ENST00000491725 RP11-810P12.1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000492365 KB-1683C8.1-001 processed_pseudogene Homo_sapiens 0 739
ENST00000526522 RPS2-006 protein_coding Homo_sapiens 0 399
ENST00000526586 RPS2-015 protein_coding Homo_sapiens 0 209
ENST00000527109 RPS2-005 retained_intron Homo_sapiens 0 396
ENST00000527871 RPS2-004 retained_intron Homo_sapiens 0 396
ENST00000529806 RPS2-008 protein_coding Homo_sapiens 0 701
ENST00000530225 RPS2-017 protein_coding Homo_sapiens 0 209
ENST00000531065 RPS2-003 retained_intron Homo_sapiens 0 723
ENST00000532746 RPS2-012 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000533161 RPS2-002 retained_intron Homo_sapiens 0 396
ENST00000533186 RPS2-013 protein_coding Homo_sapiens 0 603
ENST00000533872 RPS2-011 retained_intron Homo_sapiens 0 601
ENST00000554490 RPS2P2-001 processed_pseudogene Homo_sapiens 0 625
ENST00000610837 RP11-19G24.1-001 processed_pseudogene Homo_sapiens 0 640
ENST00000612648 CTB-75G16.1-001 processed_pseudogene Homo_sapiens 0 737

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