C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416278 RP11-570G20.1-001 ENSG00000226701 9606 + 10:72189941-72190576 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000416278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000416278 0.227±0.00 0.163±0.00 0.778±0.00 0.341±0.29 0.162±0.00 0.129±0.00 0.082±0.04 0.093±0.00 0.020±0.00 0.103±0.00 0.201±0.00 0.123±0.05 0.081±0.01 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VS CIL_0007VS_0001 VISTA 10:71953326-72556599
CIL_0000Q0 CIL_0000Q0_0002 CGP 10:72096032-72235860

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000184247 Rpl15-ps2-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000088480 Rpl15-ps3-001 processed_pseudogene Mus_musculus 0 649
ENSMUST00000112598 Rpl15-005 protein_coding Mus_musculus 0 649
ENSMUST00000079419 Rpl15-004 protein_coding Mus_musculus 0 649
ENSMUST00000100799 Rpl15-002 protein_coding Mus_musculus 0 649
ENSMUST00000080281 Rpl15-001 protein_coding Mus_musculus 0 649
ENSMUST00000081993 Gm10020-201 protein_coding Mus_musculus 0 649
ENSMUST00000105169 Gm4294-201 processed_pseudogene Mus_musculus 0 643
ENSMUST00000119496 Gm10224-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000120953 Gm13413-001 processed_pseudogene Mus_musculus 0 582
ENSMUST00000097103 Gm8420-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000121621 Gm12726-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000189382 RP23-277E3.1-001 processed_pseudogene Mus_musculus 0 564
ENSMUST00000117717 Gm14094-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000122161 Gm16210-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000121557 Gm13688-001 processed_pseudogene Mus_musculus 0 507
ENSMUST00000121890 Gm12035-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000117231 Gm11191-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000073317 Gm5292-001 processed_pseudogene Mus_musculus 0 401
ENSMUST00000118237 Gm11500-001 processed_pseudogene Mus_musculus 0 392
ENSMUST00000118944 Gm15400-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000147121 Rpl15-003 protein_coding Mus_musculus 0 329
ENSMUST00000120694 Rpl15-ps1-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000122372 Rpl15-ps4-001 processed_pseudogene Mus_musculus 0 268
ENSMUST00000132957 Gm15733-001 processed_pseudogene Mus_musculus 4.00001e-40 169

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