C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455201 HNRNPA3P5-001 ENSG00000236565 9606 - 13:65787932-65788764 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverOvaryPlacentaTestisENST00000455201
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Ovary Placenta Testis
ENST00000455201 0.027±0.00 0.111±0.00 0.056±0.00 0.027±0.00 0.062±0.00 0.125±0.00 0.157±0.03 0.087±0.06 0.095±0.01 0.062±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008HT CIL_0008HT_0001 VISTA 13:65735667-66336616

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 1230
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 1227
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 1227
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 1227
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 1227
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 1227
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 1221
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 1221
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 1212
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 1199
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 1197
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 1182
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 1158
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 1147
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 1144
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 1127
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1118
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 1099
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1070
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 1055
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 1022
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 1014
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 898
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 874
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 865
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 691
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 673
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 606
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 547
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 531
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 523
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 521
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 333
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 0 298
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 222
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 198

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