C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A3 pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000472163 HNRNPA3P6-001 ENSG00000213300 9606 + 3:75214631-75215636 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000472163
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000472163 0.012±0.00 0.110±0.09 0.011±0.00 0.148±0.12 0.078±0.00 0.183±0.00 0.181±0.00 0.034±0.00 0.043±0.00 0.640±0.55 0.015±0.00 0.512±0.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000125165 Gm11847-001 processed_pseudogene Mus_musculus 0 1341
ENSMUST00000119442 Gm13369-001 processed_pseudogene Mus_musculus 0 1310
ENSMUST00000121434 Gm14052-001 processed_pseudogene Mus_musculus 0 1301
ENSMUST00000122378 Gm14730-001 processed_pseudogene Mus_musculus 0 1291
ENSMUST00000189662 RP23-472J11.2-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000117756 Gm12194-001 processed_pseudogene Mus_musculus 0 1177
ENSMUST00000166043 Gm17082-001 processed_pseudogene Mus_musculus 0 1116
ENSMUST00000117582 Gm5940-001 processed_pseudogene Mus_musculus 0 985
ENSMUST00000177820 Gm9242-201 protein_coding Mus_musculus 0 985
ENSMUST00000121942 Gm6161-001 processed_pseudogene Mus_musculus 0 979
ENSMUST00000091130 Gm5641-201 protein_coding Mus_musculus 0 979
ENSMUST00000090792 Hnrnpa3-201 protein_coding Mus_musculus 0 979
ENSMUST00000164947 Hnrnpa3-202 protein_coding Mus_musculus 0 979
ENSMUST00000111961 Hnrnpa3-003 protein_coding Mus_musculus 0 979
ENSMUST00000111962 Hnrnpa3-001 protein_coding Mus_musculus 0 979
ENSMUST00000111964 Hnrnpa3-002 protein_coding Mus_musculus 0 979
ENSMUST00000120017 Gm12960-001 processed_pseudogene Mus_musculus 0 977
ENSMUST00000161973 Gm6397-001 processed_pseudogene Mus_musculus 0 974
ENSMUST00000071732 Gm6793-201 protein_coding Mus_musculus 0 963
ENSMUST00000168178 Gm6254-001 processed_pseudogene Mus_musculus 0 955
ENSMUST00000032395 Gm7399-001 processed_pseudogene Mus_musculus 0 952
ENSMUST00000119652 Gm11991-001 processed_pseudogene Mus_musculus 0 944
ENSMUST00000117287 Gm14398-001 processed_pseudogene Mus_musculus 0 929
ENSMUST00000073014 Gm8991-201 protein_coding Mus_musculus 0 918
ENSMUST00000119765 Gm9431-001 processed_pseudogene Mus_musculus 0 883
ENSMUST00000119643 Gm6758-001 processed_pseudogene Mus_musculus 0 881
ENSMUST00000120104 Gm12129-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000172004 Gm6153-001 processed_pseudogene Mus_musculus 0 843
ENSMUST00000119775 Gm6506-001 processed_pseudogene Mus_musculus 0 837
ENSMUST00000191574 RP24-177N20.1-001 processed_pseudogene Mus_musculus 0 830
ENSMUST00000119037 Gm12986-001 processed_pseudogene Mus_musculus 0 819
ENSMUST00000184369 Gm17190-001 translated_processed_pseudogene Mus_musculus 0 795
ENSMUST00000120507 Gm12961-001 processed_pseudogene Mus_musculus 0 695
ENSMUST00000185178 Gm17190-002 protein_coding Mus_musculus 0 691
ENSMUST00000120487 Gm12229-001 processed_pseudogene Mus_musculus 0 627
ENSMUST00000141974 Hnrnpa3-004 protein_coding Mus_musculus 0 582
ENSMUST00000089593 Gm7551-201 processed_pseudogene Mus_musculus 0 580
ENSMUST00000121177 Gm5383-001 processed_pseudogene Mus_musculus 0 525
ENSMUST00000163579 Gm9064-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000118087 Gm13351-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000132392 Hnrnpa3-005 retained_intron Mus_musculus 0 390
ENSMUST00000167880 Sbf2-006 retained_intron Mus_musculus 0 313
ENSMUST00000117573 Gm15678-001 processed_pseudogene Mus_musculus 0 270

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