C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520036 ACTBP6-001 ENSG00000203413 9606 + 8:84948585-84949674 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartMuscleTestisENST00000520036
Transcript ID Adipose Breast Colon Heart Muscle Testis
ENST00000520036 0.014±0.00 0.031±0.00 0.028±0.00 0.013±0.00 0.024±0.00 0.013±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 586
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 438
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 390
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 390
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 322
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 322
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 320
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 309
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 305
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 291
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 291
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 287
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 279
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 278
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 270
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 270
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 254
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 252
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 244
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 226
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 200
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 198
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 198
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 5e-31 139

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