C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 17228
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165006 Gm17228-001 ENSMUSG00000091426 10090 - 17:63346920-63347410 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165006
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165006 0.335±0.22 0.235±0.15 0.132±0.00 0.874±0.00 0.808±0.63 0.426±0.15 0.143±0.05 0.493±0.22 0.170±0.09 0.347±0.25 0.134±0.00 0.794±0.58 0.439±0.25 0.335±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z5 CIL_0004Z5_0002 CGP 17:62604184-63500017
CIL_0007UW CIL_0007UW_0002 VISTA 17:62871422-63473537

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 374
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 351
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 346
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 340
ENSDART00000080664 protein_coding Danio_rerio 0 335
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 318
ENST00000290378 ACTC1-001 protein_coding Homo_sapiens 0 379
ENST00000331789 ACTB-001 protein_coding Homo_sapiens 0 425
ENST00000331925 ACTG1-001 protein_coding Homo_sapiens 0 508
ENST00000356920 POTEE-001 protein_coding Homo_sapiens 0 377
ENST00000357462 POTEF-201 protein_coding Homo_sapiens 0 372
ENST00000366683 ACTA1-201 protein_coding Homo_sapiens 0 331
ENST00000366684 ACTA1-001 protein_coding Homo_sapiens 0 370
ENST00000397487 POTEKP-001 unprocessed_pseudogene Homo_sapiens 0 372
ENST00000409602 POTEJ-001 protein_coding Homo_sapiens 0 383
ENST00000409914 POTEF-001 protein_coding Homo_sapiens 0 372
ENST00000411655 ACTBP14-001 processed_pseudogene Homo_sapiens 0 353
ENST00000415794 ACTG1P1-001 processed_pseudogene Homo_sapiens 0 300
ENST00000417101 ACTB-012 protein_coding Homo_sapiens 0 219
ENST00000417657 LA16c-3G11.7-001 processed_pseudogene Homo_sapiens 0 394
ENST00000418351 ACTBP7-001 processed_pseudogene Homo_sapiens 0 335
ENST00000420887 RP11-259P15.3-001 processed_pseudogene Homo_sapiens 0 257
ENST00000423293 RP11-12M9.4-001 processed_pseudogene Homo_sapiens 0 333
ENST00000423783 POTENP-001 processed_pseudogene Homo_sapiens 0 263
ENST00000425660 ACTB-002 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000428275 ACTG1P10-001 processed_pseudogene Homo_sapiens 0 388
ENST00000432588 ACTB-008 protein_coding Homo_sapiens 0 387
ENST00000438944 RP11-480I12.9-001 transcribed_processed_pseudogene Homo_sapiens 0 250
ENST00000441772 AC139143.2-001 processed_pseudogene Homo_sapiens 0 344
ENST00000443528 ACTB-009 protein_coding Homo_sapiens 0 237
ENST00000446382 ACTG1P14-001 processed_pseudogene Homo_sapiens 0 320
ENST00000451531 POTEI-001 protein_coding Homo_sapiens 0 383
ENST00000462494 ACTB-003 retained_intron Homo_sapiens 0 300
ENST00000477812 ACTB-007 retained_intron Homo_sapiens 0 405
ENST00000480301 ACTB-006 retained_intron Homo_sapiens 0 279
ENST00000484841 ACTB-005 retained_intron Homo_sapiens 0 425
ENST00000493945 ACTB-004 retained_intron Homo_sapiens 0 425
ENST00000512165 CH17-12M21.1-001 processed_pseudogene Homo_sapiens 0 305
ENST00000515712 ACTBP2-001 processed_pseudogene Homo_sapiens 0 359
ENST00000520036 ACTBP6-001 processed_pseudogene Homo_sapiens 0 244
ENST00000547848 POTEM-001 protein_coding Homo_sapiens 0 315
ENST00000564713 RP11-429P3.4-001 transcribed_processed_pseudogene Homo_sapiens 0 335
ENST00000570382 ACTG1-014 protein_coding Homo_sapiens 0 315
ENST00000571691 ACTG1-017 protein_coding Homo_sapiens 0 431
ENST00000571721 ACTG1-013 protein_coding Homo_sapiens 0 453
ENST00000572105 ACTG1-015 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000573283 ACTG1-003 protein_coding Homo_sapiens 0 508
ENST00000575087 ACTG1-002 protein_coding Homo_sapiens 0 508
ENST00000575659 ACTG1-010 protein_coding Homo_sapiens 0 508
ENST00000575842 ACTG1-012 protein_coding Homo_sapiens 0 508
ENST00000575994 ACTG1-011 protein_coding Homo_sapiens 0 508
ENST00000576209 ACTG1-009 retained_intron Homo_sapiens 0 470
ENST00000576214 ACTG1-016 retained_intron Homo_sapiens 0 339
ENST00000576544 ACTG1-006 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000576917 ACTG1-004 retained_intron Homo_sapiens 0 508
ENST00000615544 ACTG1-201 protein_coding Homo_sapiens 0 508

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