C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557753 RP11-452K20.1-001 ENSG00000258570 9606 + 15:94168349-94168751 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastENST00000557753
Transcript ID Breast
ENST00000557753 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UC CIL_0008UC_0001 VISTA 15:93681345-94283913

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000119546 H3f3a-ps1-001 processed_pseudogene Mus_musculus 0 364
ENSMUST00000162814 H3f3a-003 protein_coding Mus_musculus 0 359
ENSMUST00000161308 H3f3a-001 protein_coding Mus_musculus 0 359
ENSMUST00000120752 Gm3835-001 processed_pseudogene Mus_musculus 0 353
ENSMUST00000179671 Gm10257-201 processed_pseudogene Mus_musculus 0 350
ENSMUST00000119459 H3f3c-001 processed_pseudogene Mus_musculus 0 348
ENSMUST00000119560 Gm12657-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000119544 H3f3a-ps2-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000179566 Gm6132-201 processed_pseudogene Mus_musculus 0 339
ENSMUST00000120136 Gm15763-001 processed_pseudogene Mus_musculus 0 322
ENSMUST00000159789 H3f3a-007 protein_coding Mus_musculus 0 320
ENSMUST00000169993 Gm17136-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000121719 Gm12271-001 processed_pseudogene Mus_musculus 0 313
ENSMUST00000171334 Gm4938-201 processed_pseudogene Mus_musculus 0 305
ENSMUST00000120730 Gm15220-001 processed_pseudogene Mus_musculus 0 233
ENSMUST00000174739 Gm20545-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000077630 RP23-249L15.2-001 processed_pseudogene Mus_musculus 2.94273e-44 182
ENSMUST00000186232 RP23-128A11.4-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000121637 Gm14383-001 processed_pseudogene Mus_musculus 1.00053e-42 176
ENSMUST00000119321 Gm14568-001 processed_pseudogene Mus_musculus 9e-30 134

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