C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H3 histone, family 3A, pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119546 H3f3a-ps1-001 ENSMUSG00000082284 10090 + X:101824515-101824924 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000119546
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000119546 0.568±0.15 0.233±0.13 0.047±0.02 0.438±0.30 0.498±0.00 0.308±0.05 0.236±0.15 0.126±0.10 0.289±0.19 0.514±0.08 0.089±0.07 0.141±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230495 H3F3AP6-001 processed_pseudogene Homo_sapiens 0 630
ENST00000321285 RP11-402J6.3-001 processed_pseudogene Homo_sapiens 0 612
ENST00000366813 H3F3A-002 protein_coding Homo_sapiens 0 647
ENST00000366814 H3F3A-003 protein_coding Homo_sapiens 0 451
ENST00000366815 H3F3A-001 protein_coding Homo_sapiens 0 647
ENST00000366816 H3F3A-004 protein_coding Homo_sapiens 0 647
ENST00000369387 H3F3AP4-001 processed_pseudogene Homo_sapiens 0 647
ENST00000404612 HIST1H3PS1-001 processed_pseudogene Homo_sapiens 0 510
ENST00000416267 RP11-349N19.2-001 processed_pseudogene Homo_sapiens 0 592
ENST00000416765 RP1-22N22.1-001 processed_pseudogene Homo_sapiens 0 540
ENST00000421430 RP11-4M23.4-001 processed_pseudogene Homo_sapiens 0 470
ENST00000440551 H3F3BP1-001 processed_pseudogene Homo_sapiens 0 606
ENST00000475267 H3F3AP5-001 processed_pseudogene Homo_sapiens 0 568
ENST00000496255 RP11-473P24.2-001 processed_pseudogene Homo_sapiens 0 455
ENST00000497682 H3F3AP3-001 processed_pseudogene Homo_sapiens 0 544
ENST00000505098 CTC-505O3.1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000509149 CTC-470C15.1-001 processed_pseudogene Homo_sapiens 0 291
ENST00000532005 RP11-745I13.1-001 processed_pseudogene Homo_sapiens 0 259
ENST00000547971 RP11-98E6.1-001 processed_pseudogene Homo_sapiens 0 257
ENST00000557753 RP11-452K20.1-001 processed_pseudogene Homo_sapiens 0 364
ENST00000559063 CTD-2651B20.2-001 processed_pseudogene Homo_sapiens 0 459
ENST00000559984 H3F3AP1-001 processed_pseudogene Homo_sapiens 0 350
ENST00000604278 RP11-124D2.7-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 359
ENST00000604456 RP11-124D2.7-002 processed_transcript Homo_sapiens 0 379
ENST00000619270 CTD-2062A1.2-001 processed_pseudogene Homo_sapiens 0 274

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